Evaluation and optimization of the Sysmex UF1000i system for the screening of urinary tract infection in primary health care elderly patients

Objective Urinary tract infections (UTIs) are a common problem in the elderly population. Urine culture is still considered the "gold standard" to diagnose infection in this population. However, urine cultures are laborious and costly, and most samples will yield no growth. Methods An evaluation was made of the Sysmex UF-1000i flow cytometer as a screening tool for UTI in an elderly population older than 65 years who lived in the community, using 346 urine samples submitted for culture. Results The Receiver Operating Characteristic (ROC) analysis showed a significant difference (P < 0.01) between 0.98 bacteria area under the curve value and 0.82 of white blood cells (WBC). The combination of both counts for screening did not show any improvement in specificity or sensitivity. According to our data, the use of a single cut-off point of 200 bacteria/μL is suggested, in which the sensitivity and specificity were 99.11% and 91.59%, respectively, with a NPV of 99.49%. Moreover, this cut-off value could avoid 60.24% of the samples to be cultured, with a minimal false negative results rate of 0.87%. Conclusions The stratification of age groups stratification helps in selecting a more adjusted Sysmex UF1000i cut-off limit, leading to an improvement in the screening parameters that would imply a better management of these infections, as well as a high reduction in the workload and cost savings

The oenological interest of fumaric acid: Stop malolactic fermentation and preserve the freshness of wines

ABSTRACT One of the problems related to the increase in average temperatures in the wine-growing regions is the lower accumulation of organic acids in the berries. Wine freshness depends to a great extent on its acidity. Herein, the effectiveness of fumaric acid to inhibit malolactic fermentation or to stop it once initiated is evaluated in order to preserve the malic acid content. Different doses of fumaric acid and SO2 were tested. The ability of these compounds to inhibit bacterial development and stop the malic acid degradation was testedonaredwineofthevarietyVitisviniferaL.cv.Tempranillowhosemalicacidcontentwassetat1.5g/L. The control wine inoculated with 6 log CFU/mL of Oenococcus oeni finished the malolactic fermentation in 12 days. However, the use of doses equal to or greater than 300mg/L of fumaric acid delayed the onset of malolactic fermentation for more than 50 days with little degradation of malic acid. In addition, fumaric acid proved to be effective in stopping malolactic fermentation already started where the bacterial count was 7 log CFU/mL. Fumaric acid can be considered as a potent inhibitor of malolactic fermentation

Use of Schizosaccharomyces strains for wine fermentation? Effect on the wine composition and food safety

Schizosaccharomyceswas initially considered as a spoilage yeast because of the production of undesirable metabolites such as acetic acid, hydrogen sulfide, or acetaldehyde, but it currently seems to be of great value in enology.o ced Nevertheless, Schizosaccharomyces can reduce all of the malic acid in must, leading to malolactic fermentation. Malolactic fermentation is a highly complicated process in enology and leads to a higher concentration of biogenic amines, so the use of Schizosaccharomyces pombe can be an excellent tool for assuring wine safety. Schizosaccharomyces also has much more potential than only reducing the malic acid content, such as increasing the level of pyruvic acid and thus the vinylphenolic pyranoanthocyanin content. Until now, few commercial strains have been available and little research on the selection of appropriate yeast strains with such potential has been conducted. In this study, selected and wild Sc. pombe strains were used along with a Saccharomyces cerevisiae strain to ferment red grape must. The results showed significant differences in several parameters including non-volatile and volatile compounds, anthocyanins, biogenic amines and sensory parameters

diXa: a data infrastructure for chemical safety assessment

Motivation: The field of toxicogenomics (the application of ‘-omics' technologies to risk assessment of compound toxicities) has expanded in the last decade, partly driven by new legislation, aimed at reducing animal testing in chemical risk assessment but mainly as a result of a paradigm change in toxicology towards the use and integration of genome wide data. Many research groups worldwide have generated large amounts of such toxicogenomics data. However, there is no centralized repository for archiving and making these data and associated tools for their analysis easily available. Results: The Data Infrastructure for Chemical Safety Assessment (diXa) is a robust and sustainable infrastructure storing toxicogenomics data. A central data warehouse is connected to a portal with links to chemical information and molecular and phenotype data. diXa is publicly available through a user-friendly web interface. New data can be readily deposited into diXa using guidelines and templates available online. Analysis descriptions and tools for interrogating the data are available via the diXa portal. Availability and implementation: http://www.dixa-fp7.eu Contact: [email protected]; [email protected] Supplementary information: Supplementary data are available at Bioinformatics onlin

Meta-analysis of 49 549 individuals imputed with the 1000 Genomes Project reveals an exonic damaging variant in ANGPTL4 determining fasting TG levels

Background So far, more than 170 loci have been associated with circulating lipid levels through genomewide association studies (GWAS). These associations are largely driven by common variants, their function is often not known, and many are likely to be markers for the causal variants. In this study we aimed to identify more new rare and low-frequency functional variants associated with circulating lipid levels. Methods We used the 1000 Genomes Project as a reference panel for the imputations of GWAS data from ~60 000 individuals in the discovery stage and ~90 000 samples in the replication stage. Results Our study resu

Dendritic cell deficiencies persist seven months after SARS-CoV-2 infection

Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV)-2 infection induces an exacerbated inflammation driven by innate immunity components. Dendritic cells (DCs) play a key role in the defense against viral infections, for instance plasmacytoid DCs (pDCs), have the capacity to produce vast amounts of interferon-alpha (IFN-α). In COVID-19 there is a deficit in DC numbers and IFN-α production, which has been associated with disease severity. In this work, we described that in addition to the DC deficiency, several DC activation and homing markers were altered in acute COVID-19 patients, which were associated with multiple inflammatory markers. Remarkably, previously hospitalized and nonhospitalized patients remained with decreased numbers of CD1c+ myeloid DCs and pDCs seven months after SARS-CoV-2 infection. Moreover, the expression of DC markers such as CD86 and CD4 were only restored in previously nonhospitalized patients, while no restoration of integrin β7 and indoleamine 2,3-dyoxigenase (IDO) levels were observed. These findings contribute to a better understanding of the immunological sequelae of COVID-19

Performance of Apple (Malus xdomestica Borkh.) Cultivars Grown in Different Chilean Regions on a Six-year Trial, Part I: Vegetative Growth, Yield, and Phenology

Torres, CA (reprint author), Univ Talca, Ctr Pomaceas, Fac Ciencias Agr, POB 747, Talca, Chile.Performance of seven apple (Mains xdomestica Borkh.) cultivars ('Brookfield (R) Gala', 'Galaxy', 'Super Chief', 'Granny Smith', 'Fuji Raku Raku', 'Cripp's Pink', and 'Braeburn') on M.M.106 and M.9 EMLA rootstocks during their first 6 years was evaluated on a multisite trial in Chile. Second-leaf trees were planted in experimental blocks inside commercial orchards located in five major apple-producing areas in Chile (Graneros, San Clemente, Chillan, Angol, and Temuco). Tree height and volume, trunk cross-sectional area (TCA), fruit yield and size distribution, crop load, and tree phenology were assessed annually. In general, tree growth rates by the end of the third year, when they reached the desired height, were similar in all block locations. M.9 EM LA rootstock reduced tree height by approximate to 20% in 'Brookfield Gala', 'Fuji', 'Galaxy', and 'Granny Smith'. This rootstock also had 50% smaller TCAs than M.M.106's at Year 6 in most cultivars. The highest productions in 'Brookfield (R) Gala', 'Galaxy', 'Granny Smith', 'Cripp's Pink', and 'Super Chief', regardless of rootstock, were obtained in San Clemente and Chillan's blocks. Although M.M. 106 trees delivered higher yields per plant, M.9 EMLA yield efficiency (no. fruit/cm(2) TCA) was significantly higher. In general, the higher the latitude (toward south), the later budbreak, full bloom, and harvest occurred

Reduction of apple tree height (Malus domestica Borkh) cv. Ultra Red Gala/MM111 does not decrease fruit yield and quality

Yuri, JA (Yuri, J. A.)1; Ibarra-Romero, M (Ibarra-Romero, M.)1; Vasquez, JL (Vasquez, J. L.)1; Lepe, V (Lepe, V.)1; Gonzalez-Talice, J (Gonzalez-Talice, J.)1; del Pozo, A (del Pozo, A.)2_____________________________1. Univ Talca, Ctr Pomaceas, Fac Ciencias Agr, Talca, Chile 2. Univ Talca, Dept Agr Prod, Fac Ciencias Agr, Talca, ChileIn Chile, like in other countries, a high percentage of apple (Malus domestica Borkh) orchards are grafted on vigorous or semi-vigorous rootstocks. The need to decrease the amount of labor involved and increase efficiency has motivated this study on the effect of reducing the height of cv. Ultra Red Gala/MM111 trees in a commercial orchard in the Maule Region of Chile. Apple trees were planted in 2003, and their tree heights were adjusted to 2.5, 3.0 and 3.6 m prior to blooming in 2006. The reduction of plant height from 3.6 m to 2.5 in determined a significant reduction in canopy volume (26% and 29% in 2007/2008 and 200812009, respectively), but no differences were detected in leaf area index (LAI) and the photosynthetic active radiation (PAR) transmitted through the canopy. However, a higher proportion of the canopies of the shorter trees had over 30% of incident PAR, the threshold for the production of good fruit quality and flower-bud differentiation. There were no differences in fruit production among plant heights, accumulating 131 tonnes ha(-1) in the three growing seasons. Over the three seasons, the shortest plants (2.5 m) required 19, 57 and 42% less labor time at harvest, respectively, than the plants maintained at a height of 3.6 m. There were no evident differences in fruit quality among the treatments: flesh firmness varied between 73.0 and 74.0 N, soluble solids between 11.6 and 12.6 degrees Brix, mean weight between 180 and 200 g. and the percentage of red coloring exceeded 59% of the Premium fruit in the three growing seasons. Our results suggest that it is possible to manage plants with reduced height on semi-vigorous rootstocks and thus reduce the time necessary for harvesting, without affecting fruit yield and quality. (C) 2011 Published by Elsevier B.V